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Standard Error
•
reset
4
votes
14
replies
17k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 7.1 years ago by
rraadd_8
• 0 • written 7.2 years ago by
tootiki
• 0
10
votes
11
replies
7.6k
views
Standard error and effect size from Limma
effect size
Limma
toptable
Standard Error
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
Vani
▴ 20
9
votes
6
replies
10k
views
Error bars DESeq or DESeq2 fold change
rnaseq
deseq2
deseq
standard error
confidence interval
updated 2.5 years ago by
Michael Love
41k • written 8.1 years ago by
lisa.crossman
▴ 10
0
votes
6
replies
2.5k
views
paired analysis using metagenomeSeq
metagenomeseq
logfc
paired samples
standard error
updated 21 months ago by
tom830979
• 0 • written 7.6 years ago by
manasishah86
▴ 30
2
votes
4
replies
1.3k
views
Standard error of log2FC from DESeq in time series experiment
deseq2
log2fc
standard error
timecourse
updated 6.2 years ago by
ellascottgm
• 0 • written 6.2 years ago by
Verena
• 0
2
votes
4
replies
2.2k
views
Problem obtaining standard error from limma
limma
standard error
7.9 years ago
José Luis Lavín
▴ 10
0
votes
3
replies
2.0k
views
Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
7.8 years ago
david.hughes
• 0
7 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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